1- Login to your cPanel account.
2- Find Let's Encrypt SSL.
3- Click on Let's Encrypt SSL.

4- Find the domain on which you want to install a Free SSL Certificate.
5- Click on the Issue button next to the domain name.

Please note that, don't change any settings here.
7- Click on the Issue button.

Free SSL Certificate will be installed at your domain.

Now how to repair/fix SSL warning showing in cPanel?
1- Click on the setting icon.

It will redirect you to SSL/TLS Status page.
2- Click on view certificate.

3- Now click on the button Autofill by Certificate button.

4- Then scroll down and click on the Install Certificate button.

SSL warning has successfully been fixed.
